PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03292.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 362aa    MW: 38465.2 Da    PI: 8.573
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03292.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.51.9e-3567126362
                   zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              e++lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt GGalr vP Ggg+r+nk+++
  Rsa1.0_03292.1_g00006.1  67 ETSLKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTCGGALRSVPPGGGCRRNKRTK 126
                              6789*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3354124IPR003851Zinc finger, Dof-type
PfamPF027014.6E-3069124IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.59370124IPR003851Zinc finger, Dof-type
PROSITE patternPS01361072108IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTTTVGFTGN NISQQFLPHH PLPPQSQQTP PPLHHNGSGE SGGGPGGLIR PGSMAERARL  60
ANIQLPETSL KCPRCDSTNT KFCYFNNYSL TQPRHFCKSC RRYWTCGGAL RSVPPGGGCR  120
RNKRTKNSGC GGGGGSSSSG NSKSQDSTTS NDQYHDLAVA NNQMGPTSST TSLSSLLSSY  180
NAGLIPGHDH SNNVLGLGSS YLPPLKLMPP LDFTDNSSLQ YGAVSVPSYH IGGGSSGGEA  240
SALLTGFDQW RFPITNPQPP LLGGLDNSSS SGFHQFDHHS QTGMHQQNSG QYRPKNIFHN  300
LVPLASVKME DSNNQLSVSR QIFGNEQHLW NIHGAATSTA APTTSSWSDA SNNFSSSSTS  360
NI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609578.11e-138PREDICTED: dof zinc finger protein DOF5.1-like
SwissprotQ9LZ561e-120DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBLA0A0D3EIB81e-138A0A0D3EIB8_BRAOL; Uncharacterized protein
STRINGBra028872.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115191732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.11e-105Dof family protein